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HUSAR Bioinformatics Lab API

The HUSAR Bioinformatics Lab at DKFZ provides a large number of freely available APIs. Many of these are useful in aligning DNA, RNA, or protein sequences. Alignments can be pairwise or multiple, local or global. Some of the APIs help visualize sequences or alignment results. Others edit biological sequences to make them more comprehensible to researchers.

One large group of APIs is dedicated specifically to working with nucleic acid sequences. Some analyze sequence composition or codon usage, while others locate specific genes, motifs, or CpG islands within a sequence. One group of these APIs focuses on translating DNA sequences to proteins and vice versa. A handful of others focus on working with sequence profiles. Still more look for primers, repeats, restriction sites, or transcription factors. A few others allow the user to play with sequence mutations.

Yet another group of APIs works exclusively with proteins. A few APIs in this category focus on identification and profiling. There are some that assess secondary and tertiary structure, while others focus on determining protein composition and motifs. A couple are designed to simulate mutations in proteins.

A handful of miscellaneous APIs provide background information on sequences, alignment methods, available databases, and other relevant subjects. One simply returns the current EMBOSS version number.

All of HUSAR's services are based on EMBOSS freeware and possess their own individual WSDL endpoints.

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HUSAR Bioinformatics Lab: Highlights

Summary
Suite of bioinformatics services
Category
Science
Tags
Protocols
SOAP
Data Formats
XML
API home
http://genome.dkfz-heidelberg.de/husar/index. ... 

HUSAR Bioinformatics Lab: Specifications

Functionality

Client Install Required
No  
Service Endpoint
http://www.dkfz.de/menu/biounit/dev.shtml
WSDL
http://genome.dkfz-heidelberg.de/husar/husar. ...

Signup and Licensing

Signup Requirements
None  
Developer Key Required
No  
Account Required
No  
Commercial Licensing
 
Provider
genome.dkfz-heidelberg.de/  
Managed By
HUSAR Biofinformatics Lab  
Non-Commercial Lic.
 
Data Licensing
Unspecified  
Usage Fees
None  
Program Fees
 
Certification Program
 
Usage Limits
None given 
Terms of Service
None given 

Security

Authentication Model
None 
SSL Support
 
Read-only Without Login
 

Support

Vendor API Kits
Perl, Java, C# 
Community API Kits
 
API Blog
 
Site Blog
 
API Forum
 
Developer Support
 
Console URL
 

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