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IceLogo API

IceLogo is a program that generates a sequence logo for aligned peptide sequences. A sequence logo is a histogram-like presentation in which the bars are vertical stacks of symbols. Stack height reflects the level of pattern conservation in aligned peptide sequences, and the height of individual symbols is a measure of their frequency at a given position.

Unlike other sequence logo generating programs that rely on Shannon’s information theory, IceLogo operates based on probability theory. Basically, the algorithm takes the experimental set and compares it with a reference set, which can be configured by the user. These two sets are used in a probability analysis, and the results are shown in the resulting sequence logo.

IceLogo's functions are freely available as an API using the SOAP protocol.

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IceLogo: Highlights

Summary
Peptide sequence alignment consensus visualization
Category
Science
Tags
Protocols
SOAP
Data Formats
XML
API home
http://iomics.ugent.be/icelogoserver/soap.htm ... 

IceLogo: Specifications

Functionality

Client Install Required
No  
Service Endpoint
urn:IceLogoFetcher
WSDL
http://iomics.ugent.be/icelogoserver/IceLogo. ...

Signup and Licensing

Signup Requirements
None  
Developer Key Required
No  
Account Required
No  
Commercial Licensing
 
Provider
compomics.com/  
Managed By
Computational Omics and Systems Biology Group  
Non-Commercial Lic.
 
Data Licensing
Unspecified  
Usage Fees
None  
Program Fees
 
Certification Program
 
Usage Limits
None given 
Terms of Service
None given 

Security

Authentication Model
None 
SSL Support
 
Read-only Without Login
 

Support

Vendor API Kits
Java, Taverna 
Community API Kits
 
API Blog
 
Site Blog
 
API Forum
 
Developer Support
iomics.ugent.be/icelogoserver/manual.pdf 
Console URL
 

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Mashups, Developers & Source Code

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