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TOPCONS API

TOPCONS is a program for predicting the topology of an alpha-helical membrane protein based on its amino acid sequence. The prediction is a consensus from five different topology prediction algorithms which are used as input for the TOPCONS hidden Markov model. This gives a consensus prediction for the protein, along with a reliability score based on the agreement of the included methods across the sequence. In addition, ZPRED is used to predict the Z-coordinate of each amino acid. TOPCONS functions are available programmatically via SOAP calls.

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TOPCONS: Highlights

Summary
Protein topology prediction service
Category
Science
Tags
Protocols
SOAP
Data Formats
XML
API home
http://www.topcons.net/index.php?about=help 

TOPCONS: Specifications

Functionality

Client Install Required
 
Service Endpoint
http://wsdl.sbc.su.se/topcons
WSDL
http://wsdl.sbc.su.se/wsdl/topcons.wsdl

Signup and Licensing

Signup Requirements
 
Developer Key Required
 
Account Required
 
Commercial Licensing
 
Provider
www.sbc.su.se/  
Managed By
Stockholm Bioinformatics Center, Stockholm University  
Non-Commercial Lic.
 
Data Licensing
 
Usage Fees
 
Program Fees
 
Certification Program
 
Usage Limits
 
Terms of Service
 

Security

Authentication Model
 
SSL Support
 
Read-only Without Login
 

Support

Vendor API Kits
 
Community API Kits
 
API Blog
 
Site Blog
 
API Forum
 
Developer Support
 
Console URL
 

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