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University College Dublin Bioware API

The University College Dublin hosts the Bioware server, which offers a collection of bioinformatics tools. These tools are designed for tasks such as discovering short linear motifs, characterizing peptides, and performing other such analyses of proteomics data. Three of these tools - PeptideLocator, SLiMPred, and Gopher - can be accessed programmatically via REST API.

The PeptideLocator service finds bioactive peptides in a given protein sequence. SLiMPred examines protein sequences to identify potential SLiMs (Shared Linear Motifs). Lastly, Gopher generates alignments of proteins that are orthologous (i.e. that fulfill similar roles in different species).

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University College Dublin Bioware: Highlights

Summary
Protein sequence identification and alignment services
Category
Science
Tags
Protocols
REST
Data Formats
Text
API home
http://bioware.ucd.ie/~compass/biowareweb/ 

University College Dublin Bioware: Specifications

Functionality

Client Install Required
 
Service Endpoint
http://bioware.ucd.ie/rest/

Signup and Licensing

Signup Requirements
 
Developer Key Required
 
Account Required
 
Commercial Licensing
 
Provider
www.ucd.ie/  
Managed By
University College Dublin  
Non-Commercial Lic.
 
Data Licensing
GNU GPL  
Usage Fees
 
Program Fees
 
Certification Program
 
Usage Limits
 
Terms of Service
 

Security

Authentication Model
 
SSL Support
 
Read-only Without Login
 

Support

Vendor API Kits
 
Community API Kits
 
API Blog
 
Site Blog
 
API Forum
https://groups.google.com/forum/?fromgroups#!forum/slimfinder-user-group 
Developer Support
bioware.ucd.ie/~compass/biowareweb/Server_pages/ap... 
Console URL
 

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