| API | Description | Category | Date |
|---|---|---|---|
| MyHits | Protein domain database | Science | 2012-04-10 |
| Network Analysis Tools (NeAT) | Suite of biological network analysis tools | Science | 2012-03-29 |
| Norwegian Bioinformatics Platform | Databases for significant sites in biological sequences | Science | 2012-04-06 |
| Nuclear Protein Database | Database of nuclear vertebrate proteins | Science | 2012-04-10 |
| OligoSelection | DNA microarray experiment minimal subset calculator | Science | 2012-02-13 |
| OMIM | Human genetics information database | Science | 2012-10-24 |
| Passta | Structure-based protein relationship identifier | Science | 2012-02-06 |
| Pcons | Protein model quality assessment service | Science | 2012-04-10 |
| PDBj | Protein data bank services | Medical | 2008-09-21 |
| Phospho.ELM | Protein phosphorylation site database | Science | 2012-05-10 |
| Phylogenetic Footprinting | Phylogenetic footprinting service | Science | 2012-02-07 |
| pknotsRG | RNA secondary structure prediction service | Science | 2012-01-27 |
| PlantTFDB | Database of plant transcription factors | Science | 2012-04-06 |
| ProBiS | Protein alignment and binding site detection service | Science | 2012-06-28 |
| ProDom | Protein domain family database | Science | 2012-04-06 |
| ProThesaurus | Protein name thesaurus | Science | 2012-02-10 |
| Reactome | Biological pathway database | Science | 2012-04-06 |
| Regulatory Sequence Analysis Tools | Regulatory signal detection for non-coding DNA | Science | 2012-04-06 |
| RNAhybrid | RNA hybridization prediction service | Science | 2012-01-27 |
| Roci | Phylogenetic tree-building tool | Science | 2012-02-06 |
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