| API | Description | Category | Date |
|---|---|---|---|
| RNAforester | RNA secondary structure comparison service | Science | 2012-01-31 |
| RNAshapes | RNA shape prediction service | Science | 2012-01-31 |
| KnotInFrame | DNA and RNA frameshift site prediction service | Science | 2012-01-27 |
| Reputer | Genomic repeat detection service | Science | 2012-02-01 |
| Divide-and-Conquer Multiple Sequence Alignment | Amino acid, RNA, or DNA sequence alignment service | Science | 2012-02-01 |
| Roci | Phylogenetic tree-building tool | Science | 2012-02-06 |
| RNAfold | RNA secondary structure prediction service | Science | 2012-01-31 |
| Phylogenetic Footprinting | Phylogenetic footprinting service | Science | 2012-02-07 |
| EMBOSS Backtranambig | Protein to nucleic acid back-translation service | Science | 2012-02-07 |
| EMBOSS Transeq | Nucleic acid to peptide translation service | Science | 2012-02-07 |
| EMBOSS Backtranseq | Protein to nucleic acid back-translation service | Science | 2012-02-07 |
| EMBOSS Sixpack | DNA visualization tool | Science | 2012-02-07 |
| DKFZ SoapDB | Genetics and protein sequence databases | Science | 2012-02-10 |
| EBI Kalign | Multiple sequence alignment service | Science | 2012-02-14 |
| OligoSelection | DNA microarray experiment minimal subset calculator | Science | 2012-02-13 |
| EBI Phobius | Protein topology and signal peptide prediction service | Science | 2012-02-10 |
| EBI MAFFT | Multiple sequence alignment service | Science | 2012-02-14 |
| EBI PRANK | Probabilistic multiple alignment service | Science | 2012-02-13 |
| EBI MUSCLE | Multiple sequence alignment service | Science | 2012-02-14 |
| EBI T-Coffee | Multiple sequence alignment service | Science | 2012-02-14 |
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