IceLogo is a program that generates a sequence logo for aligned peptide sequences. A sequence logo is a histogram-like presentation in which the bars are vertical stacks of symbols. Stack height reflects the level of pattern conservation in aligned peptide sequences, and the height of individual symbols is a measure of their frequency at a given position.
Unlike other sequence logo generating programs that rely on Shannonâ€™s information theory, IceLogo operates based on probability theory. Basically, the algorithm takes the experimental set and compares it with a reference set, which can be configured by the user. These two sets are used in a probability analysis, and the results are shown in the resulting sequence logo.
IceLogo's functions are freely available as an API using the SOAP protocol.
The following is a list of SDKs from our SDK directory that matched your search term. Though your definition of an SDK may differ, in our world, we define SDKs as platform- specific tools for consuming existing APIs of the sort we list in our API directory. For example, the Ruby SDK for consuming the Twitter Ads API. If you think an SDK, API, or other asset is missing from our directory, be sure to check our guidelines for making contributions to ProgrammableWeb.